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PayPal accounting automation

PayPal Deposits Don't Match Your Orders

Webgility reconciles every PayPal transaction, processing fee, refund, and dispute into QuickBooks individually, so your deposit matches your bank, your fees are expensed correctly, and your books close without manual work.

Per-transaction
Every PayPal payment posted to its own QB entry
Fee capture
PayPal processing fees expensed per transaction
Dispute tracking
Chargebacks and resolutions posted as their own events
Payout match
Net deposit matches bank matches books every cycle
The Payout Gap

PayPal Nets Fees Before It Pays You

PayPal batches dozens of payments and deducts its processing fees before depositing a single net amount to your bank account. That means the number you see in your bank statement is always less than your total orders, and without per-transaction mapping, your QuickBooks revenue line is wrong in both directions: gross revenue overstated because fees aren't captured, and expenses understated because processing costs never land in an account.

Webgility maps every PayPal charge, every processing fee, every refund, and every dispute resolution to the correct QuickBooks account. Gross revenue stays gross. Fees land in Payment Processing Fees. Net payouts match what PayPal actually transferred to your bank.

PayPal Transaction #PP-7734 · Field Mapping Auto-posted
Gross paymentSales Revenue · $95.00
PayPal processing feePayment Processing Fees · −$3.06
Sales tax collectedSales Tax Payable · $7.41
Shipping revenueShipping Income · $6.99
Net to payoutBank Deposit · $106.34
Payout Reconciliation

Every Payout Reconciled to the Penny

PayPal aggregates payments across rolling periods before sending a deposit. Webgility traces each payout back to the individual transactions, fees, and refunds in that window and posts a single reconciled deposit entry to QuickBooks. Your bank statement and your books agree without any manual addition.

Disputes and chargebacks are tracked as their own accounting events. When a PayPal dispute resolves in your favor or against you, Webgility posts the resolution automatically, so nothing collapses into an unexplained adjustment at month-end.

PAYPAL PAYOUT RECONCILIATION · MAY 20
payout_periodMay 13–19 · 193 transactions
gross_payments$18,640.00
paypal_fees−$541.56 → Payment Processing Fees
refunds−$320.00 → Refund Expense
disputes−$95.00 → Dispute Reserve Liability
net_payout$17,683.44 → Bank Deposit

match✓ Matched · zero variance
Explore Sandbox  ·  No Signup Required

See Webgility in Action.

A real instance pre-loaded with sample orders, channels, and accounting entries. Nothing to install. No account needed.

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What You Get

PayPal Accounting That Actually Closes

Webgility maps your PayPal data to your QuickBooks chart of accounts, validates with a test sync, and goes live in days. No manual exports, no spreadsheet bridges, no unexplained variances at month-end.

Per-transaction accuracy

Every PayPal payment, fee, refund, and tax amount posted individually to QuickBooks. Gross revenue stays gross. Processing fees land in the right expense account every time.

Dispute and chargeback tracking

PayPal disputes, chargeback holds, and resolutions posted as discrete accounting events. Nothing gets collapsed into an unexplained line item at month-end.

Real-time books

Income recorded with each transaction as it happens, not when you run a monthly export. Your books are always current, and your accountant always has accurate data to work from.

The Demo

Find out what your operational gaps are actually costing you.

Our team of experts will help surface your operations and finance concerns. In 30 minutes, we will discuss your channels, accounting setup, leakages, inventory inconsistencies, and close process.

Operational Snapshot ● Live
Orders reconciled today 1,247 ✓
Amazon payout tied out $47,241 ✓
Exceptions resolved 3 cleared
Inventory synced All channels ✓
Books status Certified ✓