Shopify inventory management software

Shopify Inventory That's Always Right

Shopify's native inventory works for a single-channel store. The moment you add Amazon, eBay, or wholesale channels, inventory falls out of sync with reality and with QuickBooks. Webgility keeps all three in sync at the transaction level, every sale, every return, every transfer.

Real-time sync
Inventory updates at the moment of each transaction
Multi-channel
Shopify, Amazon, eBay, and more in one sync
Transaction-level
Every sale and return triggers an inventory event
QuickBooks matched
QB inventory always reflects what's actually on hand
The Shopify Inventory Problem

Native Shopify Inventory Doesn't Know About Your Other Channels

Shopify tracks inventory for orders placed on Shopify. It does not know about Amazon sales, eBay sales, wholesale orders, or any other channel. When a unit sells on Amazon, Shopify still shows it as available. When that same unit then sells on Shopify, you've oversold.

The second problem is QuickBooks. Shopify inventory and QB inventory are completely separate systems. Unless something updates both at the same time, they drift apart immediately. Phantom counts accumulate. Your books show inventory value that doesn't match what's actually in the warehouse.

SKU WG-BLUE-M · Inventory Update Auto-posted
Shopify order #SH-9201Shopify inventory −1 · QB inventory −1
Amazon order #AM-4417Shopify inventory −1 · QB inventory −1
eBay order #EB-2203Shopify inventory −1 · QB inventory −1
Shopify return #RT-0088Shopify inventory +1 · QB inventory +1
Cross-channel inventory reconciliation

Same SKU, Three Systems, One Count

Webgility treats inventory as a single ledger across all your channels. When a unit sells on Amazon, Shopify updates and QuickBooks updates, simultaneously. When a return comes in on Shopify, the inventory add-back flows to QuickBooks at the same moment.

At the end of any period, your Shopify inventory count, your Amazon inventory count, and your QuickBooks inventory value all reflect the same reality. No manual adjustment. No spreadsheet reconciliation. No corrections at year-end.

INVENTORY RECONCILIATION · SKU WG-BLUE-M
shopify_qty142 units on hand
amazon_qty142 units on hand
qb_qty142 units on hand
qb_inventory_value$4,402.00 (@ $31.00/unit)
last_syncMay 22, 2026 · 2:14 PM

status✓ Reconciled · zero variance
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A real instance pre-loaded with sample orders, channels, and accounting entries. Nothing to install. No account needed.

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What you get

Inventory That Doesn't Lie to You

Webgility keeps Shopify, your other channels, and QuickBooks in sync at the transaction level, so inventory counts are always accurate, across every system, in real time.

Real-time across all channels

Every sale on every channel triggers an inventory update across all connected systems simultaneously. No lag, no batch runs, no overnight sync.

QB inventory always current

QuickBooks inventory value reflects exactly what's on hand. No phantom counts. No year-end write-offs for inventory that was actually sold six months ago.

No manual adjustments needed

Webgility handles every inventory event automatically, sales, returns, transfers, and adjustments. Your team stops maintaining spreadsheets and starts trusting the count.

The Demo

Find out what your operational gaps are actually costing you.

Our team of experts will help surface your operations and finance concerns. In 30 minutes, we will discuss your channels, accounting setup, leakages, inventory inconsistencies, and close process.

Operational Snapshot ● Live
Orders reconciled today 1,247 ✓
Amazon payout tied out $47,241 ✓
Exceptions resolved 3 cleared
Inventory synced All channels ✓
Books status Certified ✓