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+ QuickBooks, finally synced
Your Shopify and Amazon books are wrong. We fix that in 15 minutes.
Webgility connects Shopify and Amazon to QuickBooks, syncing every order, fee, payout, and return automatically. Stop guessing. Stop reconciling. Book a free demo and see the gap live.
- Accurate COGS and margin with correct fee mapping
- Inventory synced across Shopify, Amazon, and QuickBooks
- Amazon FBA fees, referral fees, and refunds categorized correctly
- Close your books in days, not weeks
Built for multichannel sellers · Free expert onboarding
Two stores. Zero clarity in your books.
Running Shopify and Amazon should scale your revenue, not your reconciliation hours. But different fee structures, different payout logic, and different dashboards mean your QuickBooks file is always guessing.
FBA fees, referral fees, storage charges. Manually parsing Amazon payouts takes hours and still produces errors that your accountant catches at year-end.
Shopify deposits lump gross sales, refunds, and processing fees into one number. Unpacking it into QuickBooks correctly takes time you don't have.
Orders live on both platforms but your P&L, COGS, and tax filings are always based on incomplete data. You're making pricing decisions on guesses.
You sold 12 units on Amazon and 8 on Shopify, but QuickBooks still shows the old number. Oversells happen. Customer cancellations follow.
Accurate books in 3 steps.
Authorize in minutes. Webgility maps your chart of accounts automatically. No developer needed.
Orders, fees, refunds, settlements, inventory. Posted to the right QuickBooks accounts, automatically.
Real-time, item-level financials. Tax-ready. No reconciliation nightmares. Just confidence in your numbers.
Every other Amazon + Shopify connector just goes A to B
Webgility goes deeper.
The difference between data moved and books you actually trust.
See how it works for your Shopify + Amazon setup.
Every order. Every channel. Posted right.
Webgility pulls orders from Amazon Seller Central and your Shopify store, maps each line item to your QuickBooks chart of accounts, and posts them automatically, with the detail your accountant actually needs.
- ✔ Amazon FBA, FBM, and MCF orders all supported
- ✔ Shopify POS + online orders unified
- ✔ Tax, shipping, discounts, and channel fees itemized
- ✔ Custom mapping rules per channel
Bank deposits finally make sense.
Amazon settlement reports are 30+ line items of fees, refunds, and adjustments. Shopify payouts bundle everything together. Webgility breaks each one down, matches it to the orders, and reconciles to your bank deposit automatically.
- ✔ Amazon settlement decomposition, every fee line itemized
- ✔ Shopify payout matching to individual orders
- ✔ Bank deposit reconciliation in QuickBooks
- ✔ Discrepancy alerts before your books close
Real results from real sellers.
Frequently asked questions
Can I sync both Shopify and Amazon to the same QuickBooks file? ▼
Yes. Webgility connects multiple sales channels to a single QuickBooks Desktop or QuickBooks Online company file. Each channel gets its own posting rules, but all orders land in one unified chart of accounts.
Does Webgility handle Amazon FBA fee breakdowns? ▼
Yes. Webgility decodes your Amazon settlement reports and maps every fee type, including referral fees, FBA fulfillment, pick-and-pack, storage, and return processing, to the correct QuickBooks account. No manual parsing required.
How does inventory sync work across Shopify and Amazon? ▼
When an order ships on one channel, Webgility adjusts inventory in QuickBooks and can push updated quantities back to your other channels. This reduces oversells and keeps stock levels consistent across Amazon, Shopify, and your books.
What about refunds and returns from both channels? ▼
Webgility syncs refunds from both Amazon and Shopify, posting them as credit memos or refund receipts in QuickBooks with the original order reference. Partial refunds, restocking fees, and return shipping adjustments are all captured.
Which QuickBooks versions are supported? ▼
Webgility works with QuickBooks Online, QuickBooks Desktop, QB Enterprise, and QB Advanced. It is the #1 rated QuickBooks connector in the QuickBooks App Store.
How long does setup take for Shopify + Amazon? ▼
Most sellers connect both channels and configure their posting rules in under an hour. Every plan includes free expert onboarding, and a 14-day free trial lets you test with real data before committing.
Can I add more channels later (eBay, Walmart, WooCommerce)? ▼
Absolutely. Webgility supports 50+ sales channels. You can add eBay, Walmart, WooCommerce, BigCommerce, Etsy, and more at any time, each with its own posting rules, all flowing into the same QuickBooks file.
Is my data secure? ▼
Yes. Webgility uses bank-level encryption for all data in transit and at rest. The platform is SOC 2 compliant, and your QuickBooks credentials are never stored. Authentication happens through Intuit's official OAuth flow.
Find out what your books actually know right now.
15-minute call. We connect to your QuickBooks, look at your Amazon and Shopify data, and show you exactly what’s posting correctly and what’s falling through the cracks. No pitch until you’ve seen the gap.
Or start with a trial: Try Webgility free for 14 days →