QuickBooks Shopify integration

Shopify and QuickBooks. Synced Automatically.

Webgility syncs every Shopify order, payout, refund, and inventory update to QuickBooks Online or Desktop automatically. Payouts reconciled. Taxes handled. Edited orders corrected without manual fixes. Set it once — and your books stay current.

What Webgility syncs from Shopify

Every Shopify Transaction. Nothing Left Behind.

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Order Sync

Shopify orders post to QuickBooks as sales receipts, invoices, or sales orders — as often as every 15 minutes. Line items, shipping, discounts, and taxes all captured correctly.

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Payout Reconciliation

Shopify payouts post to QuickBooks automatically for fast, accurate reconciliation. Shopify Payments fees and adjustments captured and categorized correctly.

✏️
Edited Orders

Orders edited after placement post automatically with clean, audit-ready entries. No manual corrections needed when a customer changes their order.

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Inventory Sync

Inventory updates automate across Shopify and QuickBooks with every sale, return, or manual adjustment. Sell on Amazon too? Webgility syncs all channels together.

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Tax Handling

Marketplace-collected taxes from Shopify's Shop app orders handled automatically without manual adjustments. State-level tax liability tracked correctly.

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Returns and Refunds

Shopify refunds sync to QuickBooks with the correct accounting treatment — revenue reversed, inventory restocked, and fee credits captured. Nothing left dangling.

Multi-store and multichannel

Multiple Shopify Stores. Plus Amazon, eBay, and More.

Running more than one Shopify store? Webgility connects multiple Shopify stores and integrates them all into a single QuickBooks instance. See your full financial picture across every storefront.

Selling on Amazon and eBay too? Webgility brings all your channels together — so you have one unified accounting view across every platform you sell on, all posting to one QuickBooks.

Multi-Channel QB Sync Unified
Shopify Store 1QuickBooks Online
Shopify Store 2QuickBooks Online
AmazonQuickBooks Online
eBayQuickBooks Online
All payouts unifiedOne clean P&L
Explore Sandbox  ·  No Signup Required

See Webgility in Action.

A real instance pre-loaded with sample orders, channels, and accounting entries. Nothing to install. No account needed.

🔒 my-sandbox.webgility.com
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CONTACT SALES
PREVIEW MODE
S Shopify Store
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Free to explore  ·  No account needed  ·  Sample data only
The Demo

Find out what your operational gaps are actually costing you.

Our team of experts will help surface your operations and finance concerns. In 30 minutes, we will discuss your channels, accounting setup, leakages, inventory inconsistencies, and close process.

Operational Snapshot ● Live
Orders reconciled today 1,247 ✓
Amazon payout tied out $47,241 ✓
Exceptions resolved 3 cleared
Inventory synced All channels ✓
Books status Certified ✓