Amazon orders. Shopify orders.
One QuickBooks file.
Zero spreadsheets.
Webgility connects your Amazon and Shopify stores to QuickBooks — syncing orders, fees, payouts, and inventory so your books close themselves.
Sales Receipts — All Channels
#AMZ-1048
$142.50
✔ Posted
#SH-7821
$89.00
✔ Posted
#AMZ-1049
$67.25
✔ Posted
#SH-7820
$215.00
✔ Posted
Refund #1049
-$67.25
⚠ Flagged
Settlement
$4,218.37
✔ Reconciled
Two stores. Zero clarity.
Running Amazon and Shopify should double your revenue — not double your bookkeeping headaches. But when orders, fees, and payouts live in different dashboards with different logic, your books become a guessing game.
Which of these sounds familiar?
You export CSVs from Amazon Seller Central and Shopify admin, then spend hours pasting them into QuickBooks. Every two weeks, the same ritual.
FBA fees, referral fees, storage fees, advertising deductions — Amazon takes 30+ line items out of each settlement. Your P&L never matches your bank deposit.
You sold 12 units on Amazon and 8 on Shopify — but QuickBooks still shows the old count. Oversells happen. Customers get cancellation emails.
A customer returns a Shopify order. Amazon issues a partial refund on another. Neither hits your books correctly — and you don't find out until tax time.
Amazon collects and remits sales tax in some states. Shopify charges it but you remit. Different rules, different reports, and your accountant is asking questions you can't answer.
Every other Amazon+Shopify connector just goes A to B
Webgility goes Beyond Sync.
The difference between data moved and books you actually trust.
See how it works for your Amazon + Shopify setup.
Every order. Every channel. Posted right.
Webgility pulls orders from Amazon Seller Central and your Shopify store, maps each line item to your QuickBooks chart of accounts, and posts them automatically — with the detail your accountant actually needs.
- ✔ Amazon FBA, FBM, and MCF orders all supported
- ✔ Shopify POS + online orders unified
- ✔ Tax, shipping, discounts, and channel fees itemized
- ✔ Custom mapping rules per channel
Bank deposits finally make sense.
Amazon settlement reports are 30+ line items of fees, refunds, and adjustments. Shopify payouts bundle everything together. Webgility breaks each one down, matches it to the orders, and reconciles to your bank deposit automatically.
- ✔ Amazon settlement decomposition — every fee line itemized
- ✔ Shopify payout matching to individual orders
- ✔ Bank deposit reconciliation in QuickBooks
- ✔ Discrepancy alerts before your books close
“We were spending two full days every month reconciling Amazon and Shopify in QuickBooks. Webgility cut that to 20 minutes. Our accountant thought we hired someone.”
Frequently asked questions
Yes. Webgility connects multiple sales channels to a single QuickBooks Desktop or QuickBooks Online company file. Each channel gets its own posting rules, but all orders land in one unified chart of accounts.
Yes. Webgility pulls FBA orders, FBM orders, and MCF (Multi-Channel Fulfillment) orders. It also breaks down Amazon settlement reports into individual fee lines — referral fees, FBA fees, advertising deductions, reimbursements — and reconciles them against your bank deposit.
When an order ships on one channel, Webgility adjusts inventory in QuickBooks and can push updated quantities back to your other channels. This reduces oversells and keeps stock levels consistent across Amazon, Shopify, and your books.
Webgility syncs refunds from both Amazon and Shopify, posting them as credit memos or refund receipts in QuickBooks with the original order reference. Partial refunds, restocking fees, and return shipping adjustments are all captured.
Both. Webgility supports QuickBooks Desktop (Pro, Premier, Enterprise) and QuickBooks Online. The feature set is nearly identical — the main difference is how data syncs (direct connection for Desktop, API for Online).
Most sellers connect both channels and configure their posting rules in under an hour. Webgility includes a guided setup wizard, and the support team can help map your chart of accounts if you need it. A 14-day free trial lets you test with real data before committing.
Absolutely. Webgility supports 50+ sales channels. You can add eBay, Walmart, WooCommerce, BigCommerce, Etsy, and more at any time — each with its own posting rules, all flowing into the same QuickBooks file.
Yes. Webgility uses bank-level encryption for all data in transit and at rest. The platform is SOC 2 compliant, and your QuickBooks credentials are never stored — authentication happens through Intuit's official OAuth flow.
Find out what your books
actually know right now.
15-minute call. We connect to your QuickBooks, look at your Amazon and Shopify data, and show you exactly what’s posting correctly — and what’s falling through the cracks. No pitch until you’ve seen the gap.
Or start with a trial: Try Webgility free for 14 days →
